The HDL as posted fails to load. It is missing a "," in "Or (a=Ainst b=instruction..."
After I added the "," it fails in line 61, as you reported.
Look at the line that failed to compare. The instruction that is failing is
1110001100000001
Search in the CPU.tst file for this instruction and you'll see it is
D;JGT
The value that failed to compare is the PC. The compare file PC just increments but the output file PC is set to 1000 which is the A register value, so this command jumped when it should not have.
The D register value is 0, which is not greater than 0, so the jump should not have occurred.
Look at the internal pins when the test fails and see if you can figure out why PC's load = 1.
Fix this problem and your CPU will pass the test.
When you get your CPU working, please edit you post to remove the HDL.