Best online resource to learn DFFs is
http://www.play-hookey.com/digital/sequential/A really good schematic based logic simulator that can handle sequential circuits is
Logisim.
My DFF in the Hardware Simulator would best be called a meta-DFF. It's built out of clocked Nand gates, and uses the Hardware Simulator as a logic analyzer to show what happens as inputs, including the clock, change.
--Mark